Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44019741

Genomic Region Visualization (IGV)

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Basic Information
VISDB IDTVIS44019741
Fusion NameHTLV-1-chr6 integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample IDHAM/TSP#2
Sample NameHAM/TSP#2
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHTLV-1 associated myelopathy/tropical spastic paraparesis
Disease Abbreviation-
CancerNo
Literature
PubMed ID29186194
JournalPLOS Pathogens
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq13
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start71776457
Hg19 End71776457
Hg38 Start71066754
Hg38 End71066754
Junction Sequence-
Target Gene
Target GeneENSG00000287939
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus Genome-
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-