Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44029621

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44029621
Fusion NameHTLV-1-KIF26B integration
ValidatedNo
Curated WayVISDB1.0
MethodHigh throughput sequenicng
Wet AssayNo
Sample ID-
Sample NameCo6
Sample TypeNontumor
Age54
Gender-
Disease Information
Disease NameNot given
Disease Abbreviation-
Cancer-
Literature
PubMed ID30307560
JournalThe Journal of Infectious Diseases
Published Year2019
Human Genome
Human Genome Version Descriptionhg18
Human Genome RefSeq AccessionGCF_000001405.12
Human Chromosomechr1
Cytogenetic Bandq44
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start243658481
Hg19 End243658481
Hg38 Start245428556
Hg38 End245428556
Junction Sequence-
Target Gene
Target GeneKIF26B
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype NameHTLV-1c
Virus Genome AccessionKF242506
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus GenomeHuman T-lymphotropic virus 1 strain Aus isolate Aus-CS, complete genome
Virus Genome Length9046
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-