| Basic Information ▶ | |
| VISDB ID | TVIS44033853 |
|---|---|
| Fusion Name | HTLV-1-VIM-AS1 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | RNA sequencing |
| Wet Assay | No |
| Sample ID | - |
| Sample Name | Not given |
| Sample Type | HuT 102 cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Adult T cell leukemia/lymphoma |
| Disease Abbreviation | ATL |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 25355872 |
| Journal | Journal of Virology |
| Published Year | 2015 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr10 |
| Cytogenetic Band | p13 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 17271302 |
| Hg19 End | 17271609 |
| Hg38 Start | 17229303 |
| Hg38 End | 17229610 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | VIM-AS1, VIM |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human T-lymphotropic Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | NC_001436.1 |
| TaxonomyID | 11908 |
| Virus Abbreviation | HTLV-1 |
| Virus Genome | Human T-lymphotropic virus 1, complete genome |
| Virus Genome Length | 8507 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 6100008 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D