Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS44033855

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS44033855
Fusion NameHTLV-1-ENSG00000277599 integration
ValidatedNo
Curated WayViMIC
MethodRNA sequencing
Wet AssayNo
Sample ID-
Sample NameNot given
Sample TypeHuT 102 cell line
Age-
Gender-
Disease Information
Disease NameAdult T cell leukemia/lymphoma
Disease AbbreviationATL
CancerYes
Literature
PubMed ID25355872
JournalJournal of Virology
Published Year2015
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq13.1
Human Strand
Human Integration Location Typeexonic
Hg19 Start65191308
Hg19 End65192533
Hg38 Start65423837
Hg38 End65425062
Junction Sequence-
Target Gene
Target GeneENSG00000277599, NEAT1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman T-lymphotropic Virus
Virus Subtype Name-
Virus Genome AccessionNC_001436.1
TaxonomyID11908
Virus AbbreviationHTLV-1
Virus GenomeHuman T-lymphotropic virus 1, complete genome
Virus Genome Length8507 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID6100010