| Basic Information ▶ | |
| VISDB ID | TVIS44034136 |
|---|---|
| Fusion Name | HTLV-1-HLA-A integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | RNA sequencing |
| Wet Assay | No |
| Sample ID | - |
| Sample Name | Not given |
| Sample Type | HuT 102 cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Adult T cell leukemia/lymphoma |
| Disease Abbreviation | ATL |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 25355872 |
| Journal | Journal of Virology |
| Published Year | 2015 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr6 |
| Cytogenetic Band | p22.1 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 29910640 |
| Hg19 End | 29911281 |
| Hg38 Start | 29942863 |
| Hg38 End | 29943504 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | HLA-A, ENSG00000227766, POLR1HASP |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human T-lymphotropic Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | NC_001436.1 |
| TaxonomyID | 11908 |
| Virus Abbreviation | HTLV-1 |
| Virus Genome | Human T-lymphotropic virus 1, complete genome |
| Virus Genome Length | 8507 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 6100295 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D