| Basic Information ▶ | |
| VISDB ID | TVIS44034377 |
|---|---|
| Fusion Name | HTLV-1-CACNA1C integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Viral DNA-Capture-Seq Approach |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Not given |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Adult T cell leukemia/lymphoma |
| Disease Abbreviation | ATL |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 31618639 |
| Journal | Cell Reports |
| Published Year | 2019 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr12 |
| Cytogenetic Band | p13.33 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | 2360705 |
| Hg19 End | 2360777 |
| Hg38 Start | 2251539 |
| Hg38 End | 2251611 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | CACNA1C |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human T-lymphotropic Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | AB513134.1 |
| TaxonomyID | 11908 |
| Virus Abbreviation | HTLV-1 |
| Virus Genome | Human T-lymphotropic virus 1 proviral DNA, complete genome, isolate: B1033-2009 |
| Virus Genome Length | 9034 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 6400183 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D