| Basic Information ▼ | |
| VISDB ID | TVIS44034808 |
|---|---|
| Fusion Name | HTLV-1-PCDH15 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Inverse long PCR |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Not given |
| Sample Type | JET WT35 cell line |
| Age | - |
| Gender | - |
| Disease Information ▼ | |
| Disease Name | Adult T-cell leukemia |
| Disease Abbreviation | ATL |
| Cancer | Yes |
| Literature ▼ | |
| PubMed ID | 34019588 |
| Journal | PLoS Pathogen |
| Published Year | 2021 |
| Human Genome ▼ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr10 |
| Cytogenetic Band | q21.1 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 55546159 |
| Hg38 End | 55546160 |
| Junction Sequence | - |
| Target Gene ▼ | |
| Target Gene | PCDH15, ENSG00000236744 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▼ | |
| Virus Name | Human T-lymphotropic Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | D13784.1 |
| TaxonomyID | 11908 |
| Virus Abbreviation | HTLV-1 |
| Virus Genome | Human T-lymphotropic virus 1 proviral DNA, complete genome |
| Virus Genome Length | 8400 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 6500015 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D