| Basic Information ▶ | |
| VISDB ID | TVIS44037043 |
|---|---|
| Fusion Name | HTLV-1-SPOCK3 integration |
| Validated | No |
| Curated Way | Curated |
| Method | DNA and single cell RNA sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | MT-2 |
| Sample Type | Cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Adult T-cell leukemia-lymphoma |
| Disease Abbreviation | ATL |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 34376672 |
| Journal | Nature Communications |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr4 |
| Cytogenetic Band | q32.3 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 167071306 |
| Hg38 End | 167071372 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | SPOCK3 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human T-lymphotropic Virus |
| Virus Subtype Name | - |
| Virus Genome Accession | NC_001436.1 |
| TaxonomyID | 11908 |
| Virus Abbreviation | HTLV-1 |
| Virus Genome | Human T-lymphotropic virus 1, complete genome |
| Virus Genome Length | 8507 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D