Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS45000021

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS45000021
Fusion NameXMRV-CREB5 integration
ValidatedYes
Curated WayVISDB1.0
MethodNested PCR, nested RT-PCR, or quantitative RT-PCR
Wet AssayYes
Sample ID-
Sample NameVP268
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameProstate cancer
Disease AbbreviationPCa
CancerYes
Literature
PubMed ID18684813
JournalJOURNAL OF VIROLOGY
Published Year2008
Human Genome
Human Genome Version Descriptionhg18
Human Genome RefSeq AccessionGCF_000001405.12
Human Chromosomechr7
Cytogenetic Bandp15.1
Human Strand
Human Integration Location Type-
Hg19 Start28689605
Hg19 End-
Hg38 Start28649988
Hg38 End28649988
Junction Sequence-
Target Gene
Target GeneCREB5
Nearby Gene-
Distance-
Virus Information
Virus NameXenotropic murine leukemia virus-related virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID438045
Virus AbbreviationXMRV
Virus Genome-
Virus Genome Length8562
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-