Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS46000312

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS46000312
Fusion NameBKPyV-chr12:31253628 integration
ValidatedNo
Curated WayCurated
MethodVirome capture next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameCase8_Urine
Sample TypeTumor
Age-
GenderFemale
Disease Information
Disease NameUrothelial carcinoma
Disease AbbreviationUC
CancerYes
Literature
PubMed ID37507072
JournalAmerican Journal of Transplantation
Published Year2023
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp11.21
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start31406562
Hg19 End31406562
Hg38 Start31253628
Hg38 End31253628
Junction SequenceTAAGATATATTGACAGACAGGGACAATTGCAAACAAAAATGGTTTAAACAAGGTGCTTTTATTGTACATATACATGCTTAATAAATGCTGCTTTTATATTACACATTTTAATCTTGTGTTATTTTGGGGGTGGTGTTTTAACTGGACAATATGCAAAGATGAGGTGACCAGATGTCAA
Target Gene
Target Gene-
Nearby GeneMREGP1
Distance733
Virus Information
Virus NameBK polyomavirus
Virus Subtype NameGenotype I, IV
Virus Genome AccessionAB217919.1
TaxonomyID1417981
Virus AbbreviationBKPyV
Virus GenomeBK polyomavirus DNA, complete genome, isolate: TW-3a
Virus Genome Length5146 bp
Virus Breakpoint12625
Virus Breakpoint2-
Virus Gene NameAB217919.1_large T
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-