Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS46000404

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS46000404
Fusion NameBKPyv-SSPN integration
ValidatedNo
Curated WayCurated
MethodVirome capture next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameCase16_blood
Sample TypeTumor
Age-
GenderMale
Disease Information
Disease NameUrothelial carcinoma
Disease AbbreviationUC
CancerYes
Literature
PubMed ID37507072
JournalAmerican Journal of Transplantation
Published Year2023
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp12.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start26450014
Hg19 End26450014
Hg38 Start26297081
Hg38 End26297081
Junction SequenceGGTACTTTGTCCTGTAATTCATTAGCACTCCCTGCATTTCCAAGGGGTCTCCACCAACAGCAAAGAAGTGGGCCCTTTCATGATGGTTAACCATTTACTCCATTTTTCTATTGGGTTGCTTGCATTTTTCTTGTCAACTTCAA
Target Gene
Target GeneSSPN, ENSG00000255750, ITPR2-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameBK polyomavirus
Virus Subtype NameGenotype I, IV
Virus Genome AccessionAB217921.1
TaxonomyID1417981
Virus AbbreviationBKPyV
Virus GenomeBK polyomavirus DNA, complete genome, isolate: THK-9a
Virus Genome Length5142 bp
Virus Breakpoint11892
Virus Breakpoint2-
Virus Gene NameAB217921.1_VP1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-