Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS46000600

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS46000600
Fusion NameBKPyV-chr9:125407595 integration
ValidatedNo
Curated WayCurated
MethodVirome capture next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameCase5_Tumor
Sample TypeTumor
Age-
GenderMale
Disease Information
Disease NameUrothelial carcinoma
Disease AbbreviationUC
CancerYes
Literature
PubMed ID37507072
JournalAmerican Journal of Transplantation
Published Year2023
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr9
Cytogenetic Bandq33.3
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start128169874
Hg19 End128169874
Hg38 Start125407595
Hg38 End125407595
Junction SequenceGGGGTTTACGGTGGGGTTGGAGGCTGGGTCTCCAAGGGCCTCTTTCCCTGGTGTGTGATTTTTCA|CTCACGCCTGTAATATGGATCTCTAGTTAAGGCACTGTATAGTAAGTATTCCTTATTAACACCCTTACAAATTAAAAAACTAAAAGTACACAGC
Target Gene
Target Gene-
Nearby GeneENSG00000297528
Distance326
Virus Information
Virus NameBK polyomavirus
Virus Subtype NameGenotype I, IV
Virus Genome AccessionAB217919.1
TaxonomyID1417981
Virus AbbreviationBKPyV
Virus GenomeBK polyomavirus DNA, complete genome, isolate: TW-3a
Virus Genome Length5146 bp
Virus Breakpoint13961
Virus Breakpoint2-
Virus Gene NameAB217919.1_large T
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-