| Basic Information ▶ | |
| VISDB ID | TVIS46000658 |
|---|---|
| Fusion Name | BKPyv-QRSL1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Virome capture next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Case5_Tumor |
| Sample Type | Tumor |
| Age | - |
| Gender | Male |
| Disease Information ▶ | |
| Disease Name | Urothelial carcinoma |
| Disease Abbreviation | UC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 37507072 |
| Journal | American Journal of Transplantation |
| Published Year | 2023 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr6 |
| Cytogenetic Band | q21 |
| Human Strand | + |
| Human Integration Location Type | exonic |
| Hg19 Start | 107101241 |
| Hg19 End | 107101241 |
| Hg38 Start | 106653366 |
| Hg38 End | 106653366 |
| Junction Sequence | TTCACAACCTCAGCACTGTTGGTGTTTGGGGCTGGTAATTGTTTGTTGTGGGAGACTGTCCTGTGCATTGTAAGATGTTTAGTAGCATCCCTGGCCTCTAC|TTTCTTCAGTTAGGTCTAAGCCAAACCACTGTGTGAAGCAGTCAATGCAGTAGCAATCTATCCAAACCAAGGGCTCTTTTCTTAAAAATTTTCTATTTAAATGTCTTAATCTTAGCTGACACAGCATGCAA |
| Target Gene ▶ | |
| Target Gene | QRSL1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | BK polyomavirus |
| Virus Subtype Name | Genotype I, IV |
| Virus Genome Accession | AB217919.1 |
| TaxonomyID | 1417981 |
| Virus Abbreviation | BKPyV |
| Virus Genome | BK polyomavirus DNA, complete genome, isolate: TW-3a |
| Virus Genome Length | 5146 bp |
| Virus Breakpoint1 | 4577 |
| Virus Breakpoint2 | - |
| Virus Gene Name | AB217919.1_small T |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000130348.12 |
| Gene Name | QRSL1 |
| Transcript | Transcript 1: ENST00000929845.1, Transcript 2: ENST00000929844.1, Transcript 3: ENST00000893161.1, Transcript 4: ENST00000893160.1, Transcript 5: ENST00000369046.8, Transcript 6: ENST00000971597.1, Transcript 7: ENST00000971598.1, Transcript 8: ENST00000369044.1 |
| Transcript 1 Region | intron |
| Transcript 1 Impact | intronic_insertion |
| Transcript 2 Region | intron |
| Transcript 2 Impact | intronic_insertion |
| Transcript 3 Region | intron |
| Transcript 3 Impact | intronic_insertion |
| Transcript 4 Region | intron |
| Transcript 4 Impact | intronic_insertion |
| Transcript 5 Region | intron |
| Transcript 5 Impact | intronic_insertion |
| Transcript 6 Region | intron |
| Transcript 6 Impact | intronic_insertion |
| Transcript 7 Region | intron |
| Transcript 7 Impact | intronic_insertion |
| Transcript 8 Region | 3UTR |
| Transcript 8 Impact | noncoding_exon_insertion |
| AlphaGenome Analysis | |
| Chromosome | chr6 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D