Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS46000668

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS46000668
Fusion NameBKPyv-SPG7 integration
ValidatedNo
Curated WayCurated
MethodVirome capture next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameCase5_Tumor
Sample TypeTumor
Age-
GenderMale
Disease Information ▶
Disease NameUrothelial carcinoma
Disease AbbreviationUC
CancerYes
Literature ▶
PubMed ID37507072
JournalAmerican Journal of Transplantation
Published Year2023
Human Genome ▶
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr16
Cytogenetic Bandq24.3
Human Strand-
Human Integration Location Typeexonic
Hg19 Start89615097
Hg19 End89615097
Hg38 Start89548689
Hg38 End89548689
Junction SequenceCCATGAGATGACTGATCACGTCTGGGTGTTGCCATCATAGCTATGGAAACCTCCAGCAGCTCCGATTCCCAGTTTGGTCCTCTCTCCTCACAGACGTCGCAGACCCCACACTGAG|TTAAAGTGGTAGGGTTGGTCTTTTTTTTGACACTTTTTACACTCCTTTACATTGTACTGAAATTCTAAATACATACCCAATAGTAGAAACACATCTTCACACTTTGTTTCTACTGCATATTCAGTTATTAATTTAC
Target Gene ▶
Target GeneSPG7
Nearby Gene-
Distance-
Virus Information ▶
Virus NameBK polyomavirus
Virus Subtype NameGenotype I, IV
Virus Genome AccessionAB217919.1
TaxonomyID1417981
Virus AbbreviationBKPyV
Virus GenomeBK polyomavirus DNA, complete genome, isolate: TW-3a
Virus Genome Length5146 bp
Virus Breakpoint13742
Virus Breakpoint2-
Virus Gene NameAB217919.1_large T
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
Gene IdENSG00000197912.17
Gene NameSPG7
TranscriptTranscript 1: ENST00000647079.1, Transcript 2: ENST00000646303.1, Transcript 3: ENST00000643649.1, Transcript 4: ENST00000918771.1, Transcript 5: ENST00000644498.1, Transcript 6: ENST00000918772.1, Transcript 7: ENST00000645897.1, Transcript 8: ENST00000644225.1, Transcript 9: ENST00000643668.1, Transcript 10: ENST00000965632.1, Transcript 11: ENST00000646930.1, Transcript 12: ENST00000643724.1, Transcript 13: ENST00000644781.1, Transcript 14: ENST00000644901.1, Transcript 15: ENST00000645042.1, Transcript 16: ENST00000646531.1, Transcript 17: ENST00000645063.1, Transcript 18: ENST00000646263.1, Transcript 19: ENST00000645977.1, Transcript 20: ENST00000965633.1, Transcript 21: ENST00000892261.1, Transcript 22: ENST00000645818.2, Transcript 23: ENST00000965634.1, Transcript 24: ENST00000892262.1, Transcript 25: ENST00000965630.1, Transcript 26: ENST00000965631.1, Transcript 27: ENST00000644210.1, Transcript 28: ENST00000646716.1, Transcript 29: ENST00000646826.1, Transcript 30: ENST00000268704.7, Transcript 31: ENST00000646589.1, Transcript 32: ENST00000918773.1, Transcript 33: ENST00000643105.1, Transcript 34: ENST00000645354.1, Transcript 35: ENST00000642334.1, Transcript 36: ENST00000647227.1, Transcript 37: ENST00000646445.1, Transcript 38: ENST00000643954.1, Transcript 39: ENST00000646399.1, Transcript 40: ENST00000644671.1, Transcript 41: ENST00000643496.1, Transcript 42: ENST00000647032.1, Transcript 43: ENST00000644751.1, Transcript 44: ENST00000645886.1, Transcript 45: ENST00000644171.1, Transcript 46: ENST00000566682.2, Transcript 47: ENST00000645842.1, Transcript 48: ENST00000642814.1, Transcript 49: ENST00000643350.1, Transcript 50: ENST00000645392.1, Transcript 51: ENST00000647302.1, Transcript 52: ENST00000647123.1, Transcript 53: ENST00000643409.1, Transcript 54: ENST00000646005.1, Transcript 55: ENST00000642226.1, Transcript 56: ENST00000642984.1, Transcript 57: ENST00000647491.1, Transcript 58: ENST00000645952.1, Transcript 59: ENST00000645944.1, Transcript 60: ENST00000569820.6, Transcript 61: ENST00000566221.5, Transcript 62: ENST00000645742.1, Transcript 63: ENST00000644464.1, Transcript 64: ENST00000561911.5, Transcript 65: ENST00000561702.6, Transcript 66: ENST00000565370.1, Transcript 67: ENST00000647476.1, Transcript 68: ENST00000568205.1
Transcript 1 Regionintron
Transcript 1 Impactintronic_insertion
Transcript 2 Regionintron
Transcript 2 Impactintronic_insertion
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Transcript 57 Regionintron
Transcript 57 Impactintronic_insertion
Transcript 58 Regionintron
Transcript 58 Impactintronic_insertion
Transcript 59 Regionexon_non_coding
Transcript 59 Impactnoncoding_exon_insertion
Transcript 60 Region3UTR
Transcript 60 Impactnoncoding_exon_insertion
Transcript 61 Regionintron
Transcript 61 Impactintronic_insertion
Transcript 62 Regionintron
Transcript 62 Impactintronic_insertion
Transcript 63 Regionintron
Transcript 63 Impactintronic_insertion
Transcript 64 Regionintron
Transcript 64 Impactintronic_insertion
Transcript 65 Regionexon_non_coding
Transcript 65 Impactnoncoding_exon_insertion
Transcript 66 Regionpromoter
Transcript 66 Impactpromoter_insertion
Transcript 67 Regionpromoter
Transcript 67 Impactpromoter_insertion
Transcript 68 Regionpromoter
Transcript 68 Impactpromoter_insertion
AlphaGenome Analysis
Chromosomechr16
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