| Basic Information ▼ | |
| VISDB ID | TVIS46000811 |
|---|---|
| Fusion Name | BKPyv-SPATS2 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Virome capture next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Case18_Urine |
| Sample Type | Tumor |
| Age | - |
| Gender | Male |
| Disease Information ▼ | |
| Disease Name | Urothelial carcinoma |
| Disease Abbreviation | UC |
| Cancer | Yes |
| Literature ▼ | |
| PubMed ID | 37507072 |
| Journal | American Journal of Transplantation |
| Published Year | 2023 |
| Human Genome ▼ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr12 |
| Cytogenetic Band | q13.12 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | 49811899 |
| Hg19 End | 49811899 |
| Hg38 Start | 49418116 |
| Hg38 End | 49418116 |
| Junction Sequence | TCATTTTAAATGACTCAGTTTTTTTTTTTTTTTTTTGTATTTCCAGGTTGATGGGTGCTGCTCTAGCACTTTTGGGGGACCTAGTTGCCAGTGTATCTGAGGCTGCTGCTGCCACAGGATTTTCAGTGGCTGAAATTGCTGCTGGGGAGGCTGCTGCTGCTATA |
| Target Gene ▼ | |
| Target Gene | SPATS2 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▼ | |
| Virus Name | BK polyomavirus |
| Virus Subtype Name | Genotype I, IV |
| Virus Genome Accession | AB211369.1 |
| TaxonomyID | 1417981 |
| Virus Abbreviation | BKPyV |
| Virus Genome | BK polyomavirus DNA, complete genome, isolate: Dik |
| Virus Genome Length | 5141 bp |
| Virus Breakpoint1 | 480 |
| Virus Breakpoint2 | - |
| Virus Gene Name | AB211369.1_VP1;AB211369.1_VP2;AB211369.1_VP3;AB211369.1_Agno//upstream;downstream |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D