Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS46000960

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS46000960
Fusion NameBKPyv-CSMD1 integration
ValidatedNo
Curated WayCurated
MethodVirome capture next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameCase8_blood
Sample TypeTumor
Age-
GenderFemale
Disease Information
Disease NameUrothelial carcinoma
Disease AbbreviationUC
CancerYes
Literature
PubMed ID37507072
JournalAmerican Journal of Transplantation
Published Year2023
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandp23.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start4685691
Hg19 End4685691
Hg38 Start4828169
Hg38 End4828169
Junction SequenceATTTTTTTTTTACATGAGTCCAATATTCTTCAGTCTTTTTTGACAAAGGTATACAAAGTTGATTTTCCATCACTACAACTTATCCCACGAGGAAATTCACTTCCATCCCACAAATACTCACGACAAGCTTCTGTGAAAGTTAGTAAAACCTGGACTGGAACAAAAAAAAGAGCTCAGAGGATTTTTATTTTTAT
Target Gene
Target GeneCSMD1
Nearby Gene-
Distance-
Virus Information
Virus NameBK polyomavirus
Virus Subtype NameGenotype I, IV
Virus Genome AccessionAB217919.1
TaxonomyID1417981
Virus AbbreviationBKPyV
Virus GenomeBK polyomavirus DNA, complete genome, isolate: TW-3a
Virus Genome Length5146 bp
Virus Breakpoint1286
Virus Breakpoint2-
Virus Gene NameAB217919.1_Agno
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-