Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS46001089

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS46001089
Fusion NameBKPyV-chr13:104595806 integration
ValidatedNo
Curated WayCurated
MethodWhole genome and Virus Capture sequencing
Wet AssayYes
Sample ID18R011047
Sample NameCase2
Sample TypeTumor
Age76
GenderFemale
Disease Information
Disease NameBladder Cancer
Disease AbbreviationBC
CancerYes
Literature
PubMed ID33051598
JournalOncogene
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq33.2
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start105248157
Hg19 End105248157
Hg38 Start104595806
Hg38 End104595806
Junction SequenceGGCATGTCTGTGTTAAAAGTTGGACTCACAGCCTGATTTGCAAAGTGGCAGCAGGAGCAGTTGTTATGGAACTGATTTTCCTCTTTGCCCAGATACCCTGTACTGCAAGGATTGGCCTATTTGTTCCAAAAAGCCTTCTGTGCACTGCCCTTGCATGCTATGTCAGCTTAGATTAAGGCATTTAAATAGAAAA
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameBK polyomavirus
Virus Subtype Name-
Virus Genome AccessionAB211369.1
TaxonomyID1417981
Virus AbbreviationBKPyV
Virus GenomeBK polyomavirus DNA, complete genome, isolate: Dik
Virus Genome Length5141 bp
Virus Breakpoint14782
Virus Breakpoint2-
Virus Gene NameAB211369.1_small T
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-