| Basic Information ▶ | |
| VISDB ID | TVIS46001215 |
|---|---|
| Fusion Name | BKPyv-ENSG00000284418 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Virome capture next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Case2_primary |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Urothelial Carcinoma |
| Disease Abbreviation | UC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 32724161 |
| Journal | Oncogene |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr9 |
| Cytogenetic Band | p21.3 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | 22943487 |
| Hg19 End | 22943487 |
| Hg38 Start | 22943488 |
| Hg38 End | 22943488 |
| Junction Sequence | GGGCAAAGAGGAAAATCAGCACAAACCTCTGAGCTACTCCAGGTTCCAAAATCAGGCTGATGAGCTACCTTTACATCCTGCTCCATTTTTTTATATAAAGTATTCATTCTCTTCAAGAGACCTCACCTCTTTAGACGGAACCAA |
| Target Gene ▶ | |
| Target Gene | ENSG00000284418 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | BK polyomavirus |
| Virus Subtype Name | - |
| Virus Genome Accession | DQ989813.1 |
| TaxonomyID | 1417981 |
| Virus Abbreviation | BKPyV |
| Virus Genome | BK polyomavirus isolate PittNP1, complete coding regions |
| Virus Genome Length | 4766 bp |
| Virus Breakpoint1 | 4611 |
| Virus Breakpoint2 | - |
| Virus Gene Name | DQ989813.1_large T;DQ989813.1_small T |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000284418.4 |
| Gene Name | LINC03142 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000764217.1, Transcript 2: ENST00000764218.1, Transcript 3: ENST00000764219.1, Transcript 4: ENST00000764220.1, Transcript 5: ENST00000764221.1, Transcript 6: ENST00000640003.1, Transcript 7: ENST00000764222.1, Transcript 8: ENST00000764223.1, Transcript 9: ENST00000764224.1, Transcript 10: ENST00000764227.1, Transcript 11: ENST00000764228.1, Transcript 12: ENST00000764229.1, Transcript 13: ENST00000764231.1, Transcript 14: ENST00000764232.1 |
| AlphaGenome Analysis | |
| Window | chr9:22877952-23009024 |
| RNA-seq Change (±2kb) | Mean: -5.750358923251042e-06 | Peak: 0.0035400390625 |
| ATAC Change (±2kb) | Mean: 0.0006167067331261933 | Peak: 5.40625 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 3.0% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D