| Basic Information ▶ | |
| VISDB ID | TVIS46001307 |
|---|---|
| Fusion Name | BKPyV-chr12:82018481 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Virome capture next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Case3_primary |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Urothelial Carcinoma |
| Disease Abbreviation | UC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 32724161 |
| Journal | Oncogene |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr12 |
| Cytogenetic Band | q21.31 |
| Human Strand | + |
| Human Integration Location Type | intergenic |
| Hg19 Start | 82412260 |
| Hg19 End | 82412260 |
| Hg38 Start | 82018481 |
| Hg38 End | 82018481 |
| Junction Sequence | CAATAGAAGAAAGCATTCAAGGGGGCTTAAAGGAGCATGATTTTAACCCAGAAGAGCCTGACCATGTGGTAGAAAAGAAAAACCCATTTTCTGGGGAGGAATAGAGTACCATTCGAGTGCGAGA |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | BK polyomavirus |
| Virus Subtype Name | - |
| Virus Genome Accession | AB211369.1 |
| TaxonomyID | 1417981 |
| Virus Abbreviation | BKPyV |
| Virus Genome | BK polyomavirus DNA, complete genome, isolate: Dik |
| Virus Genome Length | 5141 bp |
| Virus Breakpoint1 | 3897 |
| Virus Breakpoint2 | - |
| Virus Gene Name | AB211369.1_large T |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Region | intergenic |
| Impact | NA |
| AlphaGenome Analysis | |
| Window | chr12:81952945-82084017 |
| RNA-seq Change (±2kb) | Mean: 1.5963260011631064e-06 | Peak: 0.00423431396484375 |
| ATAC Change (±2kb) | Mean: 0.0006721213576383889 | Peak: 1.5781214237213135 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 2.4% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D