| Basic Information ▶ | |
| VISDB ID | TVIS46001481 |
|---|---|
| Fusion Name | BKPyv-HLMR1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Virome capture next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | Case3_primary |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Urothelial Carcinoma |
| Disease Abbreviation | UC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 32724161 |
| Journal | Oncogene |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr3 |
| Cytogenetic Band | q23 |
| Human Strand | + |
| Human Integration Location Type | exonic |
| Hg19 Start | 142660419 |
| Hg19 End | 142660419 |
| Hg38 Start | 142941577 |
| Hg38 End | 142941577 |
| Junction Sequence | TATTATTCCCAGGTGTTCTTTGGAACACAGGGGATTTCTCCAAAAGGCACAGAACAAATTGCCTCCAAACAGCCAAGATTCCAGCAGAAGCTGGAGTAGCTCAGAGGTTTGTGCTGATTTTCCTCTTTGCCCAGATACCCTGTACTGCAAGGATTGGCCTATTTG |
| Target Gene ▶ | |
| Target Gene | HLMR1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | BK polyomavirus |
| Virus Subtype Name | - |
| Virus Genome Accession | AB211369.1 |
| TaxonomyID | 1417981 |
| Virus Abbreviation | BKPyV |
| Virus Genome | BK polyomavirus DNA, complete genome, isolate: Dik |
| Virus Genome Length | 5141 bp |
| Virus Breakpoint1 | 4805 |
| Virus Breakpoint2 | - |
| Virus Gene Name | AB211369.1_large T;AB211369.1_small T |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D