Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS46001490

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS46001490
Fusion NameBKPyV-chr2:200017954 integration
ValidatedNo
Curated WayCurated
MethodVirome capture next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameCase3_primary
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameUrothelial Carcinoma
Disease AbbreviationUC
CancerYes
Literature
PubMed ID32724161
JournalOncogene
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq33.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start200882677
Hg19 End200882677
Hg38 Start200017954
Hg38 End200017954
Junction SequenceTTTGCTTATGCAAATTTCTGCAGCCAGCTTGAATTTCTCCTCAGAAAATGGGATTTTCTTTTCTACTGCATCATCAGGCTCTTCTGGGTTAAAATCATGCTCCTTTAAGCCCCCTTGAATGCTTTCTTCTATTGTATGGTATGGATCTCTAGTTAA
Target Gene
Target Gene-
Nearby GeneMAIP1
Distance9414
Virus Information
Virus NameBK polyomavirus
Virus Subtype Name-
Virus Genome AccessionAB211369.1
TaxonomyID1417981
Virus AbbreviationBKPyV
Virus GenomeBK polyomavirus DNA, complete genome, isolate: Dik
Virus Genome Length5141 bp
Virus Breakpoint13900
Virus Breakpoint2-
Virus Gene NameAB211369.1_large T
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-