Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS46001519

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS46001519
Fusion NameBKPyV-chr7:89681046 integration
ValidatedNo
Curated WayCurated
MethodVirome capture next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameCase3_primary
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameUrothelial Carcinoma
Disease AbbreviationUC
CancerYes
Literature
PubMed ID32724161
JournalOncogene
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq21.13
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start89310360
Hg19 End89310360
Hg38 Start89681046
Hg38 End89681046
Junction SequenceTATACAGGTAGTTCCACATTTCATAAAGAGTTTGGTAATTAATTCTTCCAAACTGGGTGGGGCCACAGCAGAAAAAAAATGGAGCAGGATGTAAAGGTAGCTCATCAGCCTGATTTTGGAACCTGGAGTAGCTCAGAGGTTTGTGCTGATTTTCCTCTTTGCCCAGATACCCTGTACTGCAAGGATTGGCCTATTTGTTCCAAAAA
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameBK polyomavirus
Virus Subtype Name-
Virus Genome AccessionAB211369.1
TaxonomyID1417981
Virus AbbreviationBKPyV
Virus GenomeBK polyomavirus DNA, complete genome, isolate: Dik
Virus Genome Length5141 bp
Virus Breakpoint14855
Virus Breakpoint2-
Virus Gene NameAB211369.1_large T;AB211369.1_small T
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-