Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS47000019

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS47000019
Fusion NameHHV7-LINC02873 integration
ValidatedNo
Curated WayCurated
MethodCapture-based next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameIg18204
Sample TypeTumor
Age10
GenderMale
Disease Information
Disease Name-
Disease Abbreviation-
Cancer-
Literature
PubMed ID37941707
JournalJMA Journal
Published Year2023
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr11
Cytogenetic Band
Human Strand-
Human Integration Location Type
Hg19 Start-
Hg19 End-
Hg38 Start130,665,098
Hg38 End130,665,099
Junction Sequence-
Target Gene
Target GeneLINC02873
Nearby Gene-
Distance-
Virus Information
Virus NameHuman herpesvirus 7
Virus Subtype Name-
Virus Genome AccessionU43400.1
TaxonomyID10372
Virus AbbreviationHHV7
Virus GenomeHuman herpesvirus-7 (HHV7) JI, complete virion genome
Virus Genome Length144861 bp
Virus Breakpoint1136,397
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-