Basic Information
VIS ID
TVIS10000040
Fusion event
HBV-chr4 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1822
Integrated sequence
GTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAAC| |TTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAA
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh38.p7
Start
190113319 (Hg38)
End
190113319 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-12113/Upstream/5174879;
Nearest TSS
ENST00000502981/Upstream/48817; ENST00000616166/Downstream/60455;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/20865, chr4-CpG: 24/Downstream/59814
Nearby gene
DUX4(+60455) ;
Downstream sequence
TTTACAAGCAGTATGCTTGGTAAAACTCAT
Junction sequence
AAATTGGTCTGCGCACCAGCACCATGCAACTTTACAAGCAGTATGCTTGGTAAAACTCAT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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