Basic Information
VIS ID
TVIS10000068
Fusion event
HBV-chr1 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1828
Integrated sequence
AGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATT
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
GRCh38.p7
Start
143213532 (Hg38)
End
143213532 (Hg38)
Orient
+
Fragile sites / regions
FRA1F
Nearest miRNA
hsa-mir-101-1/Upstream/26118804; hsa-mir-1182/Downstream/2637055;
Nearest TSS
ENST00000473358/Upstream/21633008; ENST00000443018/Downstream/286980;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/18093838, chr1-CpG: 145/Downstream/113290
Downstream sequence
GTCTGCGCACCAGCACCATGCAACTTTTTC
Junction sequence
TTTTCCGAATGGAATCGAAGAGAATCTTCGGTCTGCGCACCAGCACCATGCAACTTTTTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate