Basic Information
VIS ID
TVIS10000084
Fusion event
HBV-chr2 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1804
Integrated sequence
ATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGC| |GCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh38.p7
Start
13541976 (Hg38)
End
13541976 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-3125/Upstream/804532; hsa-mir-10b/Downstream/5806453;
Nearest TSS
ENST00000437798/Upstream/4303; ENST00000420828/Downstream/181072;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/823083, chr2-CpG: 248/Downstream/1090277
Nearby gene
LOC105373485(-8850) ;
Downstream sequence
CTAGGAGGCTGTAGGCATAAATTGGTCTGC
Junction sequence
TACTGTGCTGAACTGAAAATTTAACAGGCACTAGGAGGCTGTAGGCATAAATTGGTCTGC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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