Basic Information
VIS ID
TVIS10000097
Fusion event
HBV-LOC105373592 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1803
Integrated sequence
CATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTG| |CGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCA
Host Sequence
Chromosome
chr2
Cytoband
q14.3
Reference genome
GRCh38.p7
Start
122145555 (Hg38)
End
122145555 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105373592
Nearest miRNA
hsa-mir-1285-2/Upstream/8424187; hsa-mir-10b/Downstream/5277982;
Nearest TSS
ENST00000437798/Upstream/355063; ENST00000435441/Downstream/919766;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/389605, chr2-CpG: 79/Downstream/1879120
Downstream sequence
ACTAGGAGGCTGTAGGCATAAATTGGTCTG
Junction sequence
GAAGAGGACAGATATTTACAGGGCTTTTAGACTAGGAGGCTGTAGGCATAAATTGGTCTG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate