PRPF31 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000122
Fusion event
HBV-PRPF31 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1814
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh38.p7
Start
21612371 (Hg38)
End
21612371 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
PRPF31
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-383-3p
Nearest miRNA
hsa-mir-12113/Upstream/147613; hsa-mir-12115/Downstream/902941;
Nearest TSS
ENST00000502981/Upstream/30275; ENST00000511835/Downstream/85079;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/911658, chr4-CpG: 95/Downstream/336091
Downstream sequence
AAAAATCAACCTCATCAAAAAGGGGGCGAA
Junction sequence
GTAGGCATAAATTGGTCTGCGCACCAGCACAAAAATCAACCTCATCAAAAAGGGGGCGAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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