Basic Information
VIS ID
TVIS10000144
Fusion event
HBV-chr6 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1815
Integrated sequence
ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC
Host Sequence
Chromosome
chr6
Cytoband
p24.1
Reference genome
GRCh38.p7
Start
12636436 (Hg38)
End
12636436 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-3691/Upstream/2196642; hsa-mir-10398/Downstream/3505120;
Nearest TSS
ENST00000381078/Upstream/51032; ENST00000379348/Downstream/80369;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/623602, chr6-CpG: 44/Downstream/113209
Nearby gene
PRPF31(-51032) ; PHACTR1(+80369) ;
Downstream sequence
TAGGCATAAATTGGTCTGCGCACCACCACC
Junction sequence
ACATCGGTTCGTCAATATTTTTATGGCTGGTAGGCATAAATTGGTCTGCGCACCACCACC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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