Basic Information
VIS ID
TVIS10000158
Fusion event
HBV-chr7 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1776
Integrated sequence
CTGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACT| |AGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCA
Host Sequence
Chromosome
chr7
Cytoband
p22.1
Reference genome
GRCh38.p7
Start
6891392 (Hg38)
End
6891392 (Hg38)
Orient
-
Fragile sites / regions
FRA7B
Nearest miRNA
hsa-mir-339/Upstream/1179482; hsa-mir-10399/Downstream/175572;
Nearest TSS
ENST00000635602/Upstream/64622; ENST00000467716/Downstream/265542;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/35478, chr7-CpG: 16/Downstream/43734
Nearby gene
LOC100420863(+4208) ;
Downstream sequence
AACGACCGACCTTGAGGCATACTTTGTACT
Junction sequence
TGTCTTCCTGGCTGGCAGACAGCAGCCTTCAACGACCGACCTTGAGGCATACTTTGTACT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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