CHN2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000160
Fusion event
HBV-CHN2 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1801
Integrated sequence
GGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTC| |TGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGG
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh38.p7
Start
29397855 (Hg38)
End
29397855 (Hg38)
Orient
+
Location type
Intronic
Target gene
CHN2
Nearest miRNA
hsa-mir-1183/Upstream/2228292; hsa-mir-10399/Downstream/282879;
Nearest TSS
ENST00000635602/Upstream/1207; ENST00000493906/Downstream/2845;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/202425, chr7-CpG: 17/Downstream/165638
Downstream sequence
GTACTAGGAGGCTGTAGGCATAAATTGGTC
Junction sequence
TCCAAGTGTAAATAACTGGAAGAATGTTGAGTACTAGGAGGCTGTAGGCATAAATTGGTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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