Basic Information
VIS ID
TVIS10000187
Fusion event
HBV-LINC01501 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1829
Integrated sequence
GACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCA| |CCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTT
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh38.p7
Start
90470484 (Hg38)
End
90470484 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA9D
Target gene
LINC01501
Nearest miRNA
hsa-mir-101-2/Upstream/446949; hsa-let-7a-1/Downstream/1165767;
Nearest TSS
ENST00000422679/Upstream/3539; ENST00000476708/Downstream/112210;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/793875, chr9-CpG: 20/Downstream/172210
Downstream sequence
TCTGCGCACCAGCACCATGCAACTTTTTCA
Junction sequence
AAGTGAAACCAAGGGTTGGCTCTTTGAAAATCTGCGCACCAGCACCATGCAACTTTTTCA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
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