FAM189A1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000224
Fusion event
HBV-FAM189A1 integration
Validated
Yes
Detection method
invPCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2018
PubMed ID
29437961
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
End
1829
Integrated sequence
GACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCA| |CCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTT
Host Sequence
Chromosome
chr15
Cytoband
q13.1
Reference genome
GRCh38.p7
Start
29366454 (Hg38)
End
29366454 (Hg38)
Orient
+
Location type
Intronic
Target gene
FAM189A1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1268a/Upstream/875609; hsa-mir-10393/Downstream/1698578;
Nearest TSS
ENST00000557528/Upstream/96625; ENST00000536835/Downstream/86345;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/96515, chr15-CpG: 238/Downstream/203377
Downstream sequence
TCTGCGCACCAGCACCATGCAACTTTTTCA
Junction sequence
CAACTTTTTCAAAAGTACAGGTTCCTGACATCTGCGCACCAGCACCATGCAACTTTTTCA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Tu, T., et al. Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. J Virol ,2018,92(11).
Curate