ZNF782 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000366
Fusion event
HBV-ZNF782 integration
Validated
Yes
Detection method
invPCR+NAH
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28414318
Virus Sequence
Virus name
HBV
Subtype
A
Reference genome
X70185.1
Start
1645
End
1784
Integrated sequence
GGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCCTACTTCAAAGACTGTGTGTTTAAGGACTGGGAGGAGCTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTATTAGGAGGCTGTA
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
99607513/96845231 (Hg38)
End
99607603/96845321 (Hg38)
Location type
Intronic
Target gene
ZNF782
Nearest miRNA
hsa-let-7a-1/Upstream/1759137; hsa-mir-12126/Downstream/518233;
Nearest TSS
ENST00000422679/Upstream/67102; ENST00000372322/Downstream/7751;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/67041, chr9-CpG: 47/Downstream/8798
Target sequence
CACATACATTGTTACTTAATATACTGAGGAAGCTTAGTACCCTTTTAGGTAAAATTATTATAAATAGGATTCCTGCATACGTTTCCCATG
Reference
Chauhan, R., et al. Initial sites of hepadnavirus integration into host genome in human hepatocytes and in the woodchuck model of hepatitis B-associated hepatocellular carcinoma. Oncogenesis ,2017,6(4): e317.
Curate