Basic Information
VIS ID
TVIS10000397
Fusion event
HBV-LOC105371200 integration
Validated
Yes
Detection method
invPCR+NAH
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
E
Reference genome
Start
1646
End
1826
Integrated sequence
GTCTTACATAAGAGGACTCTTGGACTCTCTGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTCGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCA
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
End
34456971/35222600 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/1058888; hsa-mir-11401/Downstream/15070016;
Target sequence
GATTCCATTCAATGATGATTGCATTCGAGTCCATGGCTC
Reference
Chauhan, R., et al. Initial sites of hepadnavirus integration into host genome in human hepatocytes and in the woodchuck model of hepatitis B-associated hepatocellular carcinoma. Oncogenesis ,2017,6(4): e317.
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