hsa-mir-6507-5p _LIHC.png
PRC1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000402
Fusion event
HBV-PRC1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
25901726
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
End
1796
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
91509751/91509751 (Hg38)
End
91509751/91509751 (Hg38)
Orient
-
Location type
Intronic
Target gene
PRC1
miRNAs that regulate target gene
hsa-mir-373-3p ; hsa-mir-548b-3p ; hsa-mir-505-3p ; hsa-mir-125a-5p ; hsa-mir-92a-3p ; hsa-mir-1260b ; hsa-mir-3977 ; hsa-mir-4473 ; hsa-mir-3166 ; hsa-mir-633 ; hsa-mir-2277-3p ; hsa-mir-1324 ; hsa-mir-512-3p ; hsa-mir-6507-5p ; hsa-mir-5692a ; hsa-mir-520f-3p ; hsa-mir-302c-3p
Nearest miRNA
hsa-mir-10393/Upstream/1502910; hsa-mir-1302-10/Downstream/1394648;
Nearest TSS
ENST00000557528/Upstream/46414; ENST00000553410/Downstream/23140;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/212641, chr15-CpG: 153/Downstream/343032
Downstream sequence
GCCCTTTGTTGGGGGTATGCATGTATGAAC
Junction sequence
TTTGTACTAGGAGGCTGTAGGCATAAATTGGCCCTTTGTTGGGGGTATGCATGTATGAAC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dong, H., et al. Identification of HBV-MLL4 Integration and Its Molecular Basis in Chinese Hepatocellular Carcinoma. PLoS One,2015, 10(4): e0123175.
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