Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000410
Fusion event
HBV-RHPN2 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
End
2062
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
Start
End
33535159/33044253 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-32-5p ; hsa-mir-100-5p ; hsa-mir-1273g-3p ; hsa-mir-1285-3p ; hsa-mir-196a-3p ; hsa-mir-3120-3p ; hsa-mir-3187-5p ; hsa-mir-451b ; hsa-mir-4696 ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-939-3p
Nearest miRNA
hsa-mir-10395/Upstream/12644899; hsa-let-7e/Downstream/2078447;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/71851, chr19-CpG: 123/Downstream/20087
Upstream sequence
ACATTGTTCACCTCACCATACAGCACTCAG
Junction sequence
ACATTGTTCACCTCACCATACAGCACTCAGagtggccacaaactcaaagg
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Dong, H., et al. Identification of HBV-MLL4 Integration and Its Molecular Basis in Chinese Hepatocellular Carcinoma. PLoS One,2015, 10(4): e0123175.