UPF2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000417
Fusion event
HBV-UPF2 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
25901726
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
End
1824
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
12070978/12028979 (Hg38)
End
12070978/12028979 (Hg38)
Orient
+
Location type
Intronic
Target gene
UPF2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-3155a/Upstream/5876702; hsa-mir-107/Downstream/101781;
Nearest TSS
ENST00000439456/Upstream/134279; ENST00000437298/Downstream/6918;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/133918, chr10-CpG: 91/Downstream/13258
Downstream sequence
tgagtgtgggactcccgatcagcattaata
Junction sequence
TGGTCTGTTCACCAGCACCATGCAACTTTTtgagtgtgggactcccgatcagcattaata
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dong, H., et al. Identification of HBV-MLL4 Integration and Its Molecular Basis in Chinese Hepatocellular Carcinoma. PLoS One,2015, 10(4): e0123175.
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