Basic Information
VIS ID
TVIS10000419
Fusion event
HBV-C1GALT1C1L integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
25901726
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
End
1807
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
43902713/43675574 (Hg38)
End
43902713/43675574 (Hg38)
Orient
-
Location type
Intronic
Target gene
C1GALT1C1L
Nearest miRNA
hsa-mir-1301/Upstream/8204088; hsa-mir-10b/Downstream/3702101;
Nearest TSS
ENST00000437798/Upstream/38235; ENST00000460356/Downstream/748;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/37757, chr2-CpG: 42/Downstream/156052
Downstream sequence
agcttattgaagaggcattgtctaataacc
Junction sequence
AGGCTGTAGGCATAAATTGGTCTGTTCACCagcttattgaagaggcattgtctaataacc
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dong, H., et al. Identification of HBV-MLL4 Integration and Its Molecular Basis in Chinese Hepatocellular Carcinoma. PLoS One,2015, 10(4): e0123175.
Curate