APOA2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000422
Fusion event
HBV-APOA2 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
25901726
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
End
422
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
161193418/161193418 (Hg38)
End
161193418/161193418 (Hg38)
Orient
+
Location type
Intronic
Target gene
APOA2
Nearest miRNA
hsa-mir-101-1/Upstream/1293339; hsa-mir-1182/Downstream/33768;
Nearest TSS
ENST00000473358/Upstream/15450; ENST00000475570/Downstream/2333;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/15757, chr1-CpG: 41/Downstream/8601
Upstream sequence
CCAGCGTCTCTGTCCTTGGTGTCTGTGCCT
Junction sequence
CCAGCGTCTCTGTCCTTGGTGTCTGTGCCTcatcttcttgttggttcttctggactacca
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dong, H., et al. Identification of HBV-MLL4 Integration and Its Molecular Basis in Chinese Hepatocellular Carcinoma. PLoS One,2015, 10(4): e0123175.
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