AHSG _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000423
Fusion event
HBV-AHSG integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
25901726
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
End
1109
Host Sequence
Chromosome
chr3
Cytoband
q27.3
Reference genome
GRCh37/hg19
Start
186338806/186621017 (Hg38)
End
186338806/186621017 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
AHSG
Nearest miRNA
hsa-let-7g/Upstream/853113; hsa-mir-1248/Downstream/165655;
Nearest TSS
ENST00000440867/Upstream/7932; ENST00000488561/Downstream/14952;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/50168, chr3-CpG: 20/Downstream/151796
Downstream sequence
ctgctggccacgcaagtgtcacatgcgatc
Junction sequence
GATATTGTTTACACAGAAGGGCCTTGTctgctggccacgcaagtgtcacatgcgatc
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dong, H., et al. Identification of HBV-MLL4 Integration and Its Molecular Basis in Chinese Hepatocellular Carcinoma. PLoS One,2015, 10(4): e0123175.
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