AMBP _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000424
Fusion event
HBV-AMBP integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
25901726
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
End
1526
Host Sequence
Chromosome
chr9
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
116838918/116838918 (Hg38)
End
116838918/116838918 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA9E ; FRA9B
Target gene
AMBP
Nearest miRNA
hsa-let-7a-1/Upstream/2629389; hsa-mir-12126/Downstream/3406061;
Nearest TSS
ENST00000422679/Upstream/151575; ENST00000450938/Downstream/375635;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/151430, chr9-CpG: 163/Downstream/574057
Junction sequence
GTGCTGGTCATGCTGATCTCCGCCTCTGTAgcgcacctctctttacgcggtctccccgtc
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dong, H., et al. Identification of HBV-MLL4 Integration and Its Molecular Basis in Chinese Hepatocellular Carcinoma. PLoS One,2015, 10(4): e0123175.
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