Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000433
Fusion event
HBV-RPS28 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
End
1782
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
Start
End
8386583/8321699 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-1307-3p ; hsa-mir-425-5p ; hsa-mir-92b-3p ; hsa-mir-125b-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-644a ; hsa-mir-935 ; hsa-mir-3613-3p ; hsa-mir-4730 ; hsa-mir-6081 ; hsa-mir-4468 ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-25-5p ; hsa-mir-4771 ; hsa-mir-4494 ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-6502-3p
Nearest miRNA
hsa-mir-1227/Upstream/704194; hsa-let-7e/Downstream/67591;
Nearest CpG islands
chr19-CpG: 79/Target, None/Upstream, None/Downstream
Upstream sequence
CTGGGCAGGACCGGTTCTCAGGGACAGTGCac
Junction sequence
CTGGGCAGGACCGGTTCTCAGGGACAGTGCacagcctcctagtacaaagatcattaacct
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Dong, H., et al. Identification of HBV-MLL4 Integration and Its Molecular Basis in Chinese Hepatocellular Carcinoma. PLoS One,2015, 10(4): e0123175.