Basic Information
VIS ID
TVIS10000485
Fusion event
HBV-chr18 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr18
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
28180547/30600581 (Hg38)
End
28180547/30600581 (Hg38)
Nearest miRNA
hsa-mir-1-2/Upstream/301621; hsa-mir-122/Downstream/4991156;
Nearest TSS
ENST00000575820/Upstream/1072278; ENST00000583089/Downstream/112694;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2422370, chr18-CpG: 128/Downstream/440942
Nearby gene
MIR302F(-301621) ; DSC3(+389505) ;
Nearest cancer related gene
DSC3(TSG, +389505) ;
Downstream sequence
AGGGGAACTCCACAACATTCCACCAAGAAA
Junction sequence
TTTTCCCCTTTTCCTCTTTATGAGGGTTAAATGGTGATGATCAAAGAGAGTTTAAAAGCCACATTTCATGCAGGGGAACTCCACAACATTCCACCAAGAAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate