CD163L1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000489
Fusion event
HBV-CD163L1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
7510647/7358051 (Hg38)
End
7510647/7358051 (Hg38)
Location type
Intronic
Target gene
CD163L1
miRNAs that regulate target gene
hsa-mir-590-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-141/Upstream/393860; hsa-let-7i/Downstream/1881416;
Nearest TSS
ENST00000382841/Upstream/445; ENST00000345088/Downstream/9497;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/167849, chr12-CpG: 70/Downstream/81759
Downstream sequence
TAAACTGAAAATCAACAACTCTTCTTAGGTCCATCAAAGAACTGATGTCATAGGGCAAACCACTACCACCAAAATTGGAGAGACAGACAGGCAGAGACAGAGAATTGCAACTTATAGAGCAGA
Junction sequence
AGGCTTGAACAGTAGGACATGAACATGAGATGATTAGGCAGAGGTGAAACAGAGTATAAACTGAAAATCAACAACTCTTCTTAGGTCCATCAAAGAACTGATGTCATAGGGCAAACCACTACCACCAAAATTGGAGAGACAGACAGGCAGAGACAGAGAATTGCAACTTATAGAGCAGA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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