Basic Information
VIS ID
TVIS10000493
Fusion event
HBV-chr9 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
1216500/1216500 (Hg38)
End
1216500/1216500 (Hg38)
Nearest miRNA
hsa-mir-1302-9/Upstream/1186219; hsa-let-7a-1/Downstream/3633797;
Nearest TSS
ENST00000422679/Upstream/161876; ENST00000637134/Downstream/763790;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/164260, chr9-CpG: 266/Downstream/798331
Nearby gene
DMRT2(-158946) ; SMARCA2(+798719) ;
Nearest cancer related gene
SMARCA2(TSG, +798719) ;
Upstream sequence
GATGCCTCAAGGAGTCTCTGTGGCCTTGCCTTTCCATTTGCTC
Junction sequence
GATGCCTCAAGGAGTCTCTGTGGCCTTGCCTTTCCATTTGCTCGTGGTGGGGTGAACCCTGGCCCGAATGCTCCCGCTCCTACCTGATTTGCCTCTGGCCAGTGATCCTTGTTGGGGTTGAAGTCCCAATCTGGATTGTTTGAGTTGGCTCCGAACGCAGGGTGGGAACGACTTTAGAATTTGCA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate