Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000502
Fusion event
HBV-VIPR2 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
End
158866062/159073371 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10399/Upstream/481675;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/8853, chr7-CpG: 18/Downstream/20305
Upstream sequence
GTAGATTTTCCCCAGGATGCAAAGATGACACATGCTTGCAATTAGTACAATATATTGCATCCATATG
Junction sequence
GTAGATTTTCCCCAGGATGCAAAGATGACACATGCTTGCAATTAGTACAATATATTGCATCCATATGGGGTCTAGCAGAGCTTGGTGGAATGTTGTGGAGTTCCACTGCATGGCCTGAGGATGACTTTCTCTTAGAGGTGGAGAGATGGGAGTAGGCTGT
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.