Fusion event
HBV-chr11 integration
Detection method
PCR and Sanger sequencing
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
End
69479002/69664234 (Hg38)
Nearest miRNA
hsa-mir-10392/Upstream/580976; hsa-let-7a-2/Downstream/619721;
Nearest cancer related gene
Upstream sequence
GACGCTGCGTCTTATAGAGATGAGGACACACACAGTGGAAAGACGTAAGGACACGGGGGGAAGGTAGCTGTCTGCAAGGCAAGGAGAGAGGCCTCAGGAGGGAGCAGCCCTGTGACACCT
Target sequence
TTAGTtgccccacatctctcttgttagtaagtaag
Junction sequence
GACGCTGCGTCTTATAGAGATGAGGACACACACAGTGGAAAGACGTAAGGACACGGGGGGAAGGTAGCTGTCTGCAAGGCAAGGAGAGAGGCCTCAGGAGGGAGCAGCCCTGTGACACCTGAAGGGGACGGTAGAGTCCCAAACGGCCCCGAGACGGGTCGTCCGCGGGATTCAGCGCCGACGGGACGTAGACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACACCCTAGCAGCCATGGAAAGGAGGTGTATTTCCGAGAGAGGACAACAGAGTTGTCAGTTCCGATAAGTTTCGCTCCAGACCGGCTGCGAGCAAAACAAGCTGCTAGGAGTTCCGCAGTATGACCGGGCAGAGGA
* Color:
Human Sequence
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Virus Sequence
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Overlapped sequence
/
Unknown sequence
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.