Basic Information
VIS ID
TVIS10000517
Fusion event
HBV-chr8 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
43822429/43967286 (Hg38)
End
43822429/43967286 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/1071011; hsa-mir-10400/Downstream/17747502;
Nearest TSS
ENST00000518652/Upstream/771118; ENST00000518278/Downstream/2854951;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/689951, chr8-CpG: 41/Downstream/2650081
Nearby gene
POTEA(-604101) ;
Upstream sequence
GAGAGCTGGATGCAAACATCACAAAGAAGTTTCTGAGAATGCTGCTGTCTACTTTTTATATATAATCCCGTTTCCAACGAAATCCTCAAATCTA
Junction sequence
GAGAGCTGGATGCAAACATCACAAAGAAGTTTCTGAGAATGCTGCTGTCTACTTTTTATATATAATCCCGTTTCCAACGAAATCCTCAAATCTAAACAAACAGTCTTTGAAGTACGCCTCAAGGTCGGTCGTTGACATTGAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate