C8orf34 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10000528
Fusion event
HBV-C8orf34 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69666834/68754599 (Hg38)
End
69666834/68754599 (Hg38)
Location type
Intronic
Target gene
C8orf34
Nearest miRNA
hsa-mir-124-1/Upstream/4375342; hsa-mir-10400/Downstream/5793944;
Nearest TSS
ENST00000518652/Upstream/129140; ENST00000528286/Downstream/98164;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/423031, chr8-CpG: 224/Downstream/1077264
Downstream sequence
AGTGAATTAACGTCTGAGCTAAATGAAGCTGTACTATTTGCATGAATG
Junction sequence
AAAGGAGGTGTATTTCCGAGAGAGGACAACAGAGTTGTCGGTTCCGATAAGTTTCGCTCCAGACCGGCTGCGAGCAAAACAAGCTGCTAAGAGTTCCGCAGTGAATTAACGTCTGAGCTAAATGAAGCTGTACTATTTGCATGAATG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate